PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 17503
Common NameSELMODRAFT_17503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ZF-HD
Protein Properties Length: 143aa    MW: 15764.6 Da    PI: 6.0061
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
17503genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.94.1e-22255659
  ZF-HD_dimer  6 YkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 YkeC +N  a+ Gg+ + DGC+ f+++ g++g+++alkCaACgCHRnFH +e+e+
        17503  2 YKECVRNINAENGGEeVHDGCQKFTAA-GKDGSPEALKCAACGCHRNFHQQESET 55
                 *******99999986378********9.999*******************99875 PP

2Homeobox28.72.3e-0988143152
               TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
               +rkRt f++eql+ Le+l e    +  ++ +++ +  A+++g+t +  k+WF+Nr+
     17503  88 KRKRTIFSAEQLTKLEALAEsvhwSLGNIPKDQQASAAMEIGITVESLKYWFHNRK 143
               79***************99955555678999999999******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.6E-23253IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-18252IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-12255IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.595252IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-1776143IPR009057Homeodomain-like
SuperFamilySSF466893.76E-1279143IPR009057Homeodomain-like
PROSITE profilePS5007111.22485143IPR001356Homeobox domain
PfamPF000461.4E-688143IPR001356Homeobox domain
CDDcd000862.52E-488142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
LYKECVRNIN AENGGEEVHD GCQKFTAAGK DGSPEALKCA ACGCHRNFHQ QESETPTAIK  60
GSDLTQFADD ILGVDKAQSP DDSTPKEKRK RTIFSAEQLT KLEALAESVH WSLGNIPKDQ  120
QASAAMEIGI TVESLKYWFH NRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002981840.11e-105hypothetical protein SELMODRAFT_17503, partial
TrEMBLD8SEU61e-105D8SEU6_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ169331e-104(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-23homeobox protein 22
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]